A computational statistics approach for estimating the spatial range of morphogen gradients

TitleA computational statistics approach for estimating the spatial range of morphogen gradients
Publication TypeJournal Articles
Year of Publication2011
AuthorsKanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY
JournalDevelopment
Volume138
Issue22
Pagination4867 - 4874
Date Published2011/11/15/
ISBN Number0950-1991, 1477-9129
KeywordsComputational Biology, Confidence interval, Dorsal gradient, Drosophila embryo, Morphogen gradient, Statistics
Abstract

A crucial issue in studies of morphogen gradients relates to their range: the distance over which they can act as direct regulators of cell signaling, gene expression and cell differentiation. To address this, we present a straightforward statistical framework that can be used in multiple developmental systems. We illustrate the developed approach by providing a point estimate and confidence interval for the spatial range of the graded distribution of nuclear Dorsal, a transcription factor that controls the dorsoventral pattern of the Drosophila embryo.

URLhttp://dev.biologists.org/content/138/22/4867
Short TitleDevelopment